Integrated Probabilistic Annotation: A Bayesian-Based Annotation Method for Metabolomic Profiles Integrating Biochemical Connections, Isotope Patterns, and Adduct Relationships

Del Carratore F, Schmidt K, Vinaixa M, Hollywood KA, Greenland-Bews C, Takano E, Rogers S & Breitling R

Anal. Chem (2019) (doi:10.1021/acs.analchem.9b02354)


Computational identification of co-evolving multi-gene modules in microbial biosynthetic gene clusters

Del Carratore F, Zych K, Cummings M, Takano E, Medema MH & Breitling R

Communications Biology 2019 2(1):83 (doi: 10.1038/s42003-019-0333-6)


Antibiotic export: transporters involved in the final step of natural product production

Severi E & Thomas GH

Microbiology 2019 165(8):805-818 (doi: 10.1099/mic.0.000794)


The antiSMASH database version 2: a comprehensive resource on secondary metabolite biosynthetic gene clusters

Blin K, Pascal Andreu V, de Los Santos ELC, Del Carratore F, Lee SY, Medema MH & Weber T

Nucleic Acids Res. 2019 47(D1):D625-D630 (doi: 10.1093/nar/gky1060)


Defining informative priors for ensemble modelling in systems biology

Tsigkinopoulou A, Hawari A, Uttley M & Breitling R

Nature Protocols 2018 13:2643–2663 (doi: 10.1038/s41596-018-0056-z


Development and validation of an updated computational model of Streptomyces coelicolor primary and secondary metabolism

Amara A, Takano E & Breitling R

BMC Genomics 2018 19(1):519. (doi: 10.1186/s12864-018-4905-5)